PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16054
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 478aa    MW: 53753.8 Da    PI: 8.1909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16054genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000136888323
                               ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                               C++C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA16054 68 CEICNKGFQRDQNLQLHRRGH 88
                               *******************88 PP

2zf-C2H2120.00067143165123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC++C+k +  +s+ k H + +
  Tp57577_TGAC_v2_mRNA16054 143 WKCEKCSKKYAVQSDWKAHSKIC 165
                                58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.52E-76588No hitNo description
Gene3DG3DSA:3.30.160.602.2E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.116688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035583108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.52E-7138163No hitNo description
SMARTSM00355140143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MMSKQPFSVS CHSNTMKASS SNHVQQSNSN PNPNLPKKKR NLPGTPDPDS EVVAMSPKSL  60
MATNRFLCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRANK DQIKKKVYVC PEKSCVHHEP  120
SRALGDLTGI KKHYSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY KCDCGTIFSR  180
KDSFITHRAF CDALTEESGK ITTVPTALSN FRNHHLTNTH QTPRIPQIFP GFQFPSDFVN  240
SATSSIWQHH QNSDMMQTMD VFGSQTQTQN QQWLNNYSNN LSLPMLHGVM KQEQEQEENK  300
DLSHSVISSL YLSNSQNQQG GSNHMSATSL LQKASQIGST RTIISNDNNN VFNNVNNFNI  360
VHDVEKFYNK QDENGELNEL VNLGGSSGTN IEGGEYLFND SNSNNLFGIV NGTKDLDHVV  420
KEKNQMGLTR DFLGVGDDDD DDSMSRPFLQ HEVLGEFNGM GSLGNNLQSH YGGGNYC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1393441e-167AC139344.17 Medicago truncatula clone mth2-34b22, complete sequence.
GenBankAC1699791e-167AC169979.24 Medicago truncatula clone mth2-174m19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606419.20.0C2H2 and C2HC zinc finger protein, putative
SwissprotQ700D21e-112IDD10_ARATH; Zinc finger protein JACKDAW
SwissprotQ944L31e-113IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLG7JPG10.0G7JPG1_MEDTR; C2H2 and C2HC zinc finger protein, putative
STRINGGLYMA11G15950.21e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-99C2H2-like zinc finger protein